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Institutionalized Science and Ethics

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Re: Can the Collapse of WTC 1 & 2 be "Solved" by Science?

Postby David B. Benson » Sun Nov 22, 2009 10:39 pm

Here is a brief, sensible take on the whole sordid episode:
http://tamino.wordpress.com/2009/11/22/hack/
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Re: Can the Collapse of WTC 1 & 2 be "Solved" by Science?

Postby femr2 » Sun Nov 22, 2009 10:41 pm

David B. Benson wrote:femr2 --- Just some of the comments (by knowledgable people) on Real Climate.

I suggest you actually read the information before making conclusions.
Is there an element of truth in AGW, of course. Is it the full story, no. Far from it. Will my money resolve the *problem*, no. Are those involved facing an even larger scale public opposition now, yep, excellent. I may even join the precession :D

Add: In the interests of the thread topic, that's my last word here.
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Re: Can the Collapse of WTC 1 & 2 be "Solved" by Science?

Postby OneWhiteEye » Sun Nov 22, 2009 10:49 pm

David B. Benson wrote:Here is a brief, sensible take on the whole sordid episode:
http://tamino.wordpress.com/2009/11/22/hack/

I started to read but I have to admit that running into the word "denialosphere" at the start of the second paragraph (only the 3rd sentence of the article) is a bit of a stumbling block. When I see words like that, it's an immediate red flag that this is the talk of an ideologue, even if the substance of what they say is correct. I will continue, but at least I know what I'm dealing with, and will have no expectations of a balanced, unbiased argument.

This attitude, in fact, concerning a 'science' whose trademark is uncertainty (one step above sociology, in my opinion, and maybe not even that) is precisely the attitude I see in the emails, and that which I find distasteful.

I do regret drawing Dr. G's thread OT, however I think there is still some relevance.
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Re: Can the Collapse of WTC 1 & 2 be "Solved" by Science?

Postby David B. Benson » Sun Nov 22, 2009 10:58 pm

OneWhiteEye --- Tamino is an exceptionally capable statistician and has no truck for the anti-science crowd.
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Re: Can the Collapse of WTC 1 & 2 be "Solved" by Science?

Postby OneWhiteEye » Mon Nov 23, 2009 9:41 pm

Recommended by 4 out of 5 dentists.
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Re: Can the Collapse of WTC 1 & 2 be "Solved" by Science?

Postby femr2 » Mon Nov 23, 2009 11:35 pm

David B. Benson wrote:Here is a brief, sensible take on the whole sordid episode:
http://tamino.wordpress.com/2009/11/22/hack/

I've had a read through the article, and I have to say the last thing I'd describe it as is a sensible take on the whole sordid affair. I'll try to not quote it in full, but maybe I should so as to not appear to be cherry picking. We'll see...I'd best do it paragraph at a time I think...I may be a little over-verbose...

Most of you are probably already aware that recently someone managed to hack into the computer system at CRU (the Climate Research Unit in Great Britain). They stole over 60 megabytes of personal emails, which was posted online.

A lot of people are indeed aware of it, and given the underlying subject matter (Climate Change) and it's influence upon all of our lives, both in terms of our environment and of local and global policies, I find it very odd, no, actually, par-for-the-course that so little mention of it has been made in UK public news (MSM). It is conspicuous by it's absence.

Regardless of whether the accusations or rebuttals flying around are accurate or not, it's an inherently big news story, at any level, IMO. Why would the media reject an opportunity to *bash the deniers* (if that was what their position was) ? Or would that only serve to further highlight the *deniers* position to an even wider audience ? Could that be why there's been minimal/zero media coverage, even though the internet is *buzzing* ?

In my opinion, the data is not personal. Internal, yes. When I am working, I am fully aware that all of my internal and external communication (electronic, written and verbal) is fully monitored, and subject to all sorts of scrutiny. It's also been part of roles I have performed to actually facilitate that monitoring and scrutiny, either through specific manual processes, or the creation of automated scrutiny mechanisms, which includes publication of that data upwards and outwards. In such an environment, I assume every email I send may be read by, up to and including the MD/CEO or whatever organisation I may be occupying space at :wink:

The archive contains 157Mb (164,687,567 bytes), not 60Mb. The zip file is 61Mb. Petty, but accurate.

Crikey, this could take a while...

The denialosphere has trumpeted the contents as proof of the fraudulent behavior of climate scientists, especially Phil Jones at CRU. But what’s most remarkable is that even the bits pointed to as a “smoking gun” really don’t support that idea. There are certainly phrases which seem incriminating when taken out of context — but when put into context are nothing of the kind.

Certain sections of the online community are indeed jumping up and down shouting *smoking gun*, but certainly not all, including (I think) the quieter majority who have read through the content and simply felt their own personal opinion reinforced by both the content of some of the emails and the unfolding battle-ground, quote apparent in the word *denialosphere*. I'm not a Climate Change expert by any means, but I have looked at many information sources and formed a personal opinion. What is clear to me is that 6.5 billion people living their daily consumption of products with a non-zero CO2 *footprint* and breathing out CO2 24x7 in an industrialised world which is hell-bent on making new *stuff* which increases that consumption produces a lot of CO2, and that is not good, especially as that commercial expansion strips the planet of some of the resources both above and below sea-level which perform the planetary carbon recycling process. However, in addition to AGW, I'm also aware of similarly intangeable processes which affect global (nay planetary) temperature, some of which are natural, some of which may occur over pretty lengthy period of time, and some of which seem to affect other planets in our solar system in a manner similar to the effects we are apparently witnessing here, which is a bit odd, because apparrently there's not 6.5 billion people on any of those other planets to actually cause AGW. Am quite fond of the entirely unknowable effects of precession to be brutally honest. But I'm open-minded on all counts. Perhaps they ALL have some level of effect.

I do find it very frustrating that complex issues are always squeezed into black and white arguments, in that either you are a *believer* or a *denier*, and constantly shocked at how the *AGW Climate Change* camp appear to be saying (with some media manipulation I am sure) that *we* did something really bad, really recently, and unless we agree to let them do x, y & z right now, then we are all doomed, tomorrow. That is simply not the case, and again I see that as a way to attempt to get *people* to come round to a certain way of thinking. I prefer to be told the truth, the whole truth, and nothing but the truth. Which is basically that people have been talking about global warming for decades, and any plans which end up actually being implemented *may* work, but may take decades, or even longer spans of time, to actually have any appreciable effect. The focus upon money is absurd. The focus on lifestyle is absurd. The inherent focus upon the *less-rich* is absurd.

Think I went OT on a paragraph :)

I'll have to go into more detail on the in-context versus out-of-context debate a little later, as I'm primarily (supposedly) trying to address the *sensible take on the whole affair* opinion.

I'd better post this and have a cuppa-t. Object if I'm too verbose :)
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Re: Can the Collapse of WTC 1 & 2 be "Solved" by Science?

Postby femr2 » Tue Nov 24, 2009 12:10 am

Continuing to suggest that climate scientists generally, and Phil Jones specifically, are engaged in a conspiracy to deceive the world about global warming, when there turns out to be no real evidence of it in 10 years of personal communications (only words that can be twisted when taken out of context), demonstrates the idiocy of those who stand by that suggestion. If anything, the messages prove that there is not any conspiracy, and the scientists at CRU did not fudge data or engage in deceptive practices to push their “agenda.”

The issues I see with the archive are more to do with, as the topic title aptly phrases it "Institutionalised Science and Ethics", and though there are of course those who are still jumping up and down shouting *smoking gun* I hope that the silent majority are more like me and think that AGW is a *part* of global warming, but far from the truth, the whole truth and nothing but the truth.

There are numerous instances of apparent attempts to marginalise those with differing opinion (a huge problem in itself), clearly unethical suggestion of internal practice, discussion of coordinated correspondance deletion in response to FOI requests, discussion of internal stance with respect to how to avoid FOI requests (which is alarming regardless of underlying justifications). On and on. These are high-profile and very influential voices to those tasked with policy making which affects *me*, directly. I expect more. A lot more. I expect each individual to have an almost infinite amount of confidence in every single conclusion they make, because the slightest error could result in the most grandeur side-effects for humaity as a whole. Is that going too far ? I don't think so. From the discussions released it is abundently clear that confidence in their own work really is not as high as I would expect. Result ? Confidence lack. Copenhagen coming up....I will be watching the dictates unfold with great interest, and scrutiny.

The issues with data require a lot more scrutiny I think. Given the implications I do not think any private company has the right to own data which can be analysed by ANY element of the scientific community and analysed in full. Base, original data should be made public. Full details of treatment of original data should be made public. Will some people take that data and come up with ludicrous conclusions ? Sure, but there are more than a few people on this planet qualified to delve into the data. I'll pop in a couple of quotes from the emails later, but one in particular about *what science is* literally *blew me away*, in shock. I'll leave you dangling on that one... ;)
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Re: Can the Collapse of WTC 1 & 2 be "Solved" by Science?

Postby femr2 » Tue Nov 24, 2009 12:32 am

Certainly the emails contain some unkind words about certain people. I’ve said unkind things about some of them myself (here on this blog for all to see). In my opinion, the unkind words were earned by the loathesome recipients.

They do indeed, though I think it is the underlying intention of manipulation that bauks. Unkind words are fine, but being positive about an *opponent* dying is over the line, would you not say ?

Perhaps the most enlightening revelation to come out of this sordid episode is how Gavin Schmidt (at RealClimate) has addressed the issue head-on but avoided any temptation to indulge in mud-slinging, even in the midst of this despicable invasion of privacy, unjustified by any of the contents of the messages. His conduct is exemplary, and illustrates a character and self-control that I can only envy. My respect for him knows no bounds.

Again, this is a black and white resolve. *They* are wrong, *He* is right. A couple of sentences in response to a few of the posts on a blog on a fairly volatile thread does not IMO in any way actually resolve many of those questions, especially if the questions themselves had been asked in a more mild tempered manner. I'm afraid my confidence is low. I will require much more, possibly very verbose response to each and every email, regardless of how ridiculous that may seem. remember, the implications for *you* are high. This paragraph is again stepping over the many issues within the email content that I find personally... *bad*. Many questions are indeed justified, and it is not really surprising that a sudden onset of formal response has ensued. Self control is not difficult in TLI form.

My disrespect for the theives in likewise unbounded. They stole private communications, found nothing damning, but proved how willing — nay, eager — they are to distort things to make it seem as though they did. It’s every bit as immature and vindictive as stealing your sister’s diary and posting it on the internet. If she’d confessed to murder, there might be a reason to bring that to light, but when the worst you can find is that she said “I hate that bitch,” you have no business making her private thoughts public.

A brief, sensible take ? (Had to remind myself there :) ) I'm not sure what much of the article has to do with any issue that *I* have with the content of the archive. Sounds exactly like a 180. Accusing those acussing them of distortion, of distortion. Pot ? Kettle ?

Internal publications, not private IMO, as I have said.

There is a world of difference between a private diary of a family member and internal communication between high-profile and highly-influential bodies engaging in blatantly unethical conduct (at the very least).

I'm pretty sure I've missed my point entirely, but, hey, it's just my opinion.

I hope it's a lot clearer than:

David B. Benson wrote:Here is a brief, sensible take on the whole sordid episode:
http://tamino.wordpress.com/2009/11/22/hack/
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Re: Institutionalized Science and Ethics

Postby OneWhiteEye » Tue Nov 24, 2009 5:56 am

I hope they weren't using this software for anything:

http://www.anenglishmanscastle.com/HARRY_READ_ME.txt
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Re: Institutionalized Science and Ethics

Postby femr2 » Tue Nov 24, 2009 11:24 am

OneWhiteEye wrote:I hope they weren't using this software for anything:

http://www.anenglishmanscastle.com/HARRY_READ_ME.txt

Crikey. I imagine home-grown code mash is extensively used to be honest. I haven't gone through it in full, but the written (dialogue) language used is very consistent with the discussions contained within the emails, especially in terms of treating the insertion and removal of differing data-sets. Needs a tooth-comb and code analysis. There's nothing intrinsically wrong with using small codebase segments that have evolved out of *whatever*. It happens all the time in most organisations (in the background), but I don't think anyone would ever dream of using such informal processes to produce high-profile reports, conclusions and world-changing implications of those in scope within the CRU.

If so, staggering. Will take a bit of time to go through.
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Re: Institutionalized Science and Ethics

Postby newton » Tue Nov 24, 2009 5:07 pm

liitle hitch, i just melted greenland by putting an ice cube in my rum and coke....

will do checksum

check goto fridge
if, coke, then rum
if, rum, then ice cube
if ice + drink, melt
ice = greenland
end

run

i programmed a mandala graphic on an 8 bit basic computer in the eighties. that's the extent of my programming, even so, i think that's some pretty quick and dirty style programming, from what i can tell.

scary that those least capable/deserving to be in positions of power, are, for the most part, those who are in power. a weird sociological algorithm ayn rand complained about a lot.
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Re: Institutionalized Science and Ethics

Postby newton » Wed Nov 25, 2009 7:39 am

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Re: Institutionalized Science and Ethics

Postby femr2 » Thu Nov 26, 2009 12:49 am

femr2 wrote:
OneWhiteEye wrote:I hope they weren't using this software for anything:

http://www.anenglishmanscastle.com/HARRY_READ_ME.txt

Crikey. I imagine home-grown code mash is extensively used to be honest. I haven't gone through it in full, but the written (dialogue) language used is very consistent with the discussions contained within the emails, especially in terms of treating the insertion and removal of differing data-sets. Needs a tooth-comb and code analysis. There's nothing intrinsically wrong with using small codebase segments that have evolved out of *whatever*. It happens all the time in most organisations (in the background), but I don't think anyone would ever dream of using such informal processes to produce high-profile reports, conclusions and world-changing implications of those in scope within the CRU.

If so, staggering. Will take a bit of time to go through.

Crikey was right.

I'm nearly half way through, and it's absolutely ridiculous.

*Harry* inherited the most utter pile of crap from Tim N., Mark New. et al.

The data quality is clearly shocking, and I think this section aptly summarises:

You can't imagine what this has cost me - to actually allow the operator to assign false
WMO codes!! But what else is there in such situations? Especially when dealing with a 'Master'
database of dubious provenance (which, er, they all are and always will be).

False codes will be obtained by multiplying the legitimate code (5 digits) by 100, then adding
1 at a time until a number is found with no matches in the database. THIS IS NOT PERFECT but as
there is no central repository for WMO codes - especially made-up ones - we'll have to chance
duplicating one that's present in one of the other databases. In any case, anyone comparing WMO
codes between databases - something I've studiously avoided doing except for tmin/tmax where I
had to - will be treating the false codes with suspicion anyway. Hopefully.

Of course, option 3 cannot be offered for CLIMAT bulletins, there being no metadata with which
to form a new station.

This still meant an awful lot of encounters with naughty Master stations, when really I suspect
nobody else gives a hoot about. So with a somewhat cynical shrug, I added the nuclear option -
to match every WMO possible, and turn the rest into new stations (er, CLIMAT excepted). In other
words, what CRU usually do. It will allow bad databases to pass unnoticed, and good databases to
become bad, but I really don't think people care enough to fix 'em, and it's the main reason the
project is nearly a year late.


Poor Harry.

I'll keep working through, but the bottom line has already been included in the quote above. I'll repeat it...

Especially when dealing with a 'Master' database of dubious provenance (which, er, they all are and always will be)


My confidence in CRU data, and any subsequent conclusions is now....zero. (or -999, if you decide to read the actual doc)
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Poor ol' Harry.

Postby femr2 » Thu Nov 26, 2009 1:45 am

Oh, sod it. It'll do. I don't think I can justify spending any longer on a dataset, the previous version of which was completely wrong (misnamed) and nobody noticed for five years.


not hatrry, probably tim wrote:Bear in mind that there is no working synthetic method for cloud, because Mark New lost the coefficients file and never found it again (despite searching on tape archives at UEA) and never recreated it. This hasn't mattered too much, because the synthetic cloud grids had not been discarded for 1901-95, and after 1995 sunshine data is used instead of cloud data anyway.


AGREED APPROACH for cloud (5 Oct 06).

For 1901 to 1995 - stay with published data. No clear way to replicate
process as undocumented.

For 1996 to 2002:
1. convert sun database to pseudo-cloud using the f77 programs;
2. anomalise wrt 96-00 with anomdtb.f;
3. grid using quick_interp_tdm.pro (which will use 6190 norms);
4. calculate (mean9600 - mean6190) for monthly grids, using the
published cru_ts_2.0 cloud data;
5. add to gridded data from step 3.

This should approximate the correction needed.


So, erm.. now we need to create our synthetic cloud from DTR. Except that's the thing we CAN'T do because pro cal_cld_gts_tdm.pro needs those bloody coefficients (a.25.7190, etc) that went AWOL. Frustratingly we do have some of the outputs from the program (ie, a.25.01.7190.glo), but that's obviously no use.

So, erm. We need synthetic cloud for 2003-2007, or we won't have enough data to run with. And yes it's taken me this long to realise that. Oh, bugger.


Another problem. Apparently I should have derived TMN and TMX from DTR and TMP, as that's
what v2.10 did and that's what people expect. I disagree with publishing datasets that are simple arithmetic derivations of other datasets published at the same time, when the real data could be published instead.. but no.


I was going to do further backtracing, but it's been revealed that the same issues were in 2.1 - meaning that I didn't add the duff data. The suggested way forward is to not use any observations after 1989, but to allow synthetics to take over. I'm not keen on this approach as it's likely (imo) to introduce visible jumps at 1990, since we're effectively introducing a change of data source just after calculating the normals


Of course, there is no easy way to check it's working properly, since the random element (used when relaxing to the climatology) ensures that each run gives different results


I don't know which is the more worrying - the fact that adding the CLIMAT updates lost us 1251 lines from tmax but gained us 1448 for tmin, or that the BOM additions added sod all. And yes - I've checked, the int2 and int3 databases are IDENTICAL. Aaaarrgghhhhh.


I am seriously close to giving up, again. The history of this is so complex that I can't get far enough
into it before by head hurts and I have to stop. Each parameter has a tortuous history of manual and
semi-automated interventions that I simply cannot just go back to early versions and run the update prog.
I could be throwing away all kinds of corrections - to lat/lons, to WMOs (yes!), and more.

So what the hell can I do about all these duplicate stations? Well, how about fixdupes.for? That would
be perfect - except that I never finished it, I was diverted off to fight some other fire. Aarrgghhh.

I - need - a - database - cleaner.
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Re: Institutionalized Science and Ethics

Postby femr2 » Thu Nov 26, 2009 3:14 am

So what is the situation within the CRU ?

This is my take...

Various versions of a system called *cruts* have been produced.

At the time the Harry file was completed...

The CRU has published data from versions up to 2.1

Harry was tasked to update to version 3, incorporating more automation.

In the process he discovered the ridiculous level of data quality issues, and in all fairness, has tried to resolve them far more correctly that any of his *bosses* would have been bothered about in the slightest.

The published data CANNOT be reproduced, as the system was left in a non-functional, undocumented shit-pile by the previous author(s) and Harry has been forced to simply use numerous published 2.1 data-sets on that basis...no-one knows how the values were generated.

They won't use regenerated 2.1 data, as it will not match the published data...

These *mythical* data sets include things like 1901-1995 *cloud* data. A fixed 94 year dataset now being used in all future data versions, with no-one having a clue as to how that data was actually generated.

Do you think it is acceptable that organisations deriving conclusions from such data are advising policy makers who are making policy that will affect you very directly, your children, and your childrens' children ?

Wow.
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